JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAMP3_chr7_45152791_45189250	0/0	t0005	877	5	5	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0006	877	5	0	0	5	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0007	877	5	4	0	0	0	1	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0008	877	3	0	1	1	0	1	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0009	877	3	3	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0010	877	3	0	2	0	1	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0011	877	3	3	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0012	877	2	2	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0013	877	1	0	0	1	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0014	877	1	1	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0015	877	1	0	0	1	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0016	877	1	0	1	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0017	877	1	1	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0018	877	1	1	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0019	877	1	1	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0020	877	1	0	0	1	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0021	922	1	0	0	0	0	1	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0022	877	1	1	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	t0023	877	1	1	0	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RANBP10_chr16_67718070_67811560	1/1	t0001	3383	61	23	16	13	1	6	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0002	3383	41	18	11	8	0	4	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0003	3383	34	28	2	0	1	3	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0004	3383	3	3	0	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0005	3381	2	0	2	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0006	3382	2	0	2	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0007	3381	2	2	0	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0008	3383	1	1	0	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0009	3383	1	1	0	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0010	3383	1	1	0	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0011	3383	1	1	0	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0012	3383	1	0	0	0	0	1	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0013	3383	1	0	0	1	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	t0014	3383	1	0	1	0	0	0	copy fasta	RANBP10	chr16	67718070	67811560
RANBP17_chr5_170857018_171305015	0/0	t0001	1174	82	24	17	31	3	7	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0002	1174	44	25	8	0	6	5	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0003	1174	35	10	5	18	1	1	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0004	1174	21	0	10	9	0	2	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0005	1174	2	2	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0006	1174	2	2	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0007	1174	2	2	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0008	1174	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0009	1174	1	0	0	0	0	1	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0010	1174	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	t0011	1174	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP1_chr22_20111104_20132355	1/0	t0001	385	312	64	47	151	14	35	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/1	t0002	384	87	33	20	21	2	10	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	t0003	385	21	0	1	19	0	1	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	t0004	384	4	1	0	3	0	0	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	t0005	385	4	0	0	4	0	0	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	t0006	385	2	0	1	0	0	1	copy fasta	RANBP1	chr22	20111104	20132355