JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RANBP1_chr22_20111104_20132355	0/0	t0007	383	1	0	0	0	0	1	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	t0008	385	1	0	1	0	0	0	copy fasta	RANBP1	chr22	20111104	20132355
RANBP2_chr2_108714482_108790809	1/1	t0001	2034	102	20	21	33	10	16	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0002	2039	65	29	10	15	4	7	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0003	2039	16	15	1	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0004	2039	11	4	1	6	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0005	2034	7	6	1	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0006	2039	6	5	1	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0007	2039	5	0	0	5	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0008	2039	4	3	1	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0009	2039	3	0	2	0	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0010	2034	2	0	0	2	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0011	2039	2	2	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0012	2039	2	2	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0013	2039	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0014	2039	1	0	0	0	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0015	2034	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0016	2039	1	0	0	1	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0017	2039	1	0	0	0	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0018	2039	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	t0019	2039	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP3L_chr5_36241913_36306902	0/0	t0001	3228	89	1	15	55	3	15	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	1/0	t0002	3228	87	22	13	50	0	1	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/1	t0003	3228	49	8	12	20	5	3	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0004	3228	43	0	6	37	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0005	3228	32	3	3	16	0	10	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0006	3228	22	20	2	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0007	3228	12	10	1	0	0	1	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0008	3228	11	1	7	0	1	2	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0009	3228	7	6	1	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0010	3228	5	5	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0011	3228	4	0	4	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0012	3228	3	0	2	0	1	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0013	3228	3	3	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0014	3228	2	0	0	0	0	2	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0015	3228	1	1	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0016	3228	1	0	0	0	0	1	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0017	3228	1	1	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0018	3228	1	1	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0019	3228	1	0	0	0	0	1	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0020	3228	1	0	0	1	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0021	3228	1	1	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0022	3228	1	1	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	t0023	3228	1	0	0	1	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3_chr19_5911139_5983140	1/1	t0001	1530	294	82	62	110	8	30	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0002	1530	9	0	3	2	0	4	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0003	1530	6	5	1	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0004	1530	2	0	0	2	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0005	1530	2	0	0	2	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	t0006	1530	2	2	0	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140