Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATXN7_chr3_63858867_64008462	0/0	t0026	4395	2	1	0	0	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0027	4398	2	1	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0028	4397	2	0	0	2	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0029	4384	2	1	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0030	4379	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0031	4379	1	0	0	0	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0032	4379	1	0	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0033	4378	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0034	4378	1	0	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0035	4378	1	0	0	0	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0036	4380	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0037	4385	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0038	4378	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0039	4368	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0040	4378	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0041	4400	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0042	4395	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0043	4393	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0044	4395	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0045	4395	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0046	4395	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0047	4395	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0048	4395	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0049	4396	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0050	4397	1	0	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0051	4394	1	0	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0052	4395	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0053	4398	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0054	4413	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0055	4398	1	0	0	0	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0056	4399	1	0	0	0	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0057	4405	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0058	4398	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0059	4399	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0060	4398	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0061	4400	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0062	4398	1	0	0	0	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0063	4398	1	0	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0064	4395	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0065	4398	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0066	4398	1	0	0	0	1	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	t0067	4397	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
AUH_chr9_91208823_91366918	1/1	t0001	555	352	77	60	169	6	38	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	t0002	555	4	4	0	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	t0003	555	1	0	0	1	0	0	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	t0004	555	1	1	0	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUNIP_chr1_25829006_25864457	0/1	t0001	1086	227	24	36	133	7	26	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	1/0	t0002	1088	25	12	6	0	3	3	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0003	1086	18	17	1	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0004	1086	15	8	2	5	0	0	copy fasta	AUNIP	chr1	25829006	25864457