JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RANGAP1_chr22_41239779_41291187	0/0	t0023	2065	1	0	0	0	0	1	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0024	2065	1	0	0	1	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0025	2065	1	1	0	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0026	2065	1	0	0	1	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	t0027	2065	1	0	0	1	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGRF_chr17_8283670_8295087	1/1	t0001	271	384	88	70	172	18	34	copy fasta	RANGRF	chr17	8283670	8295087
RAN_chr12_130867066_130882678	1/1	t0001	1824	248	45	45	119	8	29	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0002	1824	112	20	29	50	4	9	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0003	1824	9	1	4	0	2	2	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0004	1823	9	9	0	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0005	1824	7	0	0	6	0	1	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0006	1824	6	0	0	6	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0007	1825	5	5	0	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0008	1818	3	3	0	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0009	1823	3	3	0	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0010	1824	3	3	0	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0011	1824	2	0	1	0	0	1	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0012	1825	2	1	0	0	0	1	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0013	1824	2	0	0	2	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0014	1824	2	0	0	2	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0015	1824	2	0	0	2	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0016	1824	1	1	0	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0017	1823	1	0	0	1	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0018	1824	1	0	0	0	0	1	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0019	1824	1	1	0	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0020	1824	1	1	0	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0021	1824	1	0	0	1	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0022	1823	1	0	0	1	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0023	1824	1	1	0	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0024	1824	1	0	0	1	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0025	1824	1	0	0	1	0	0	copy fasta	RAN	chr12	130867066	130882678
RAN_chr12_130867066_130882678	0/0	t0026	1824	1	0	1	0	0	0	copy fasta	RAN	chr12	130867066	130882678
RAP1A_chr1_111614789_111721691	0/1	t0001	4464	106	9	18	64	3	11	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	1/0	t0002	4464	86	29	10	32	6	8	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0003	4464	48	1	8	31	1	7	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0004	4465	41	0	9	26	0	6	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0005	4465	22	0	1	15	3	3	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0006	4465	11	10	1	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0007	4464	9	1	2	3	0	3	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0008	4464	9	9	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0009	4464	7	6	1	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0010	4464	6	0	0	6	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0011	4464	5	4	1	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0012	4464	3	3	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0013	4464	3	3	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0014	4464	2	2	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0015	4465	2	1	1	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0016	4464	2	2	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0017	4473	2	0	0	2	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0018	4465	1	0	0	0	1	0	copy fasta	RAP1A	chr1	111614789	111721691