JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP1A_chr1_111614789_111721691	0/0	t0019	4464	1	1	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0020	4464	1	1	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0021	4464	1	0	0	1	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0022	4464	1	0	1	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0023	4464	1	1	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0024	4464	1	0	1	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0025	4465	1	0	0	0	0	1	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0026	4464	1	0	1	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0027	4464	1	1	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0028	4464	1	0	0	0	0	1	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0029	4464	1	0	0	1	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0030	4464	1	0	1	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0031	4473	1	1	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0032	4473	1	0	0	1	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1A_chr1_111614789_111721691	0/0	t0033	4473	1	1	0	0	0	0	copy fasta	RAP1A	chr1	111614789	111721691
RAP1B_chr12_68605899_68676901	0/1	t0001	12826	60	7	14	32	1	5	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0002	12824	43	5	11	21	2	4	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0003	12823	31	1	0	21	1	8	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0004	12824	16	2	2	9	1	2	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0005	12823	14	13	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0006	12825	12	0	1	11	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0007	12828	10	0	0	10	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0008	12823	9	0	1	8	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0009	12828	8	8	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0010	12828	5	1	1	2	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0011	12830	4	0	0	4	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0012	12830	4	0	4	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0013	12823	4	1	2	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0014	12827	4	1	1	2	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0015	12824	4	0	1	2	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0016	12820	4	0	4	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0017	12826	3	0	0	3	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0018	12827	3	0	0	3	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0019	12828	3	0	2	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0020	12825	3	0	1	0	0	2	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0021	12825	3	0	0	3	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0022	12823	3	0	0	3	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0023	12823	3	0	1	0	0	2	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0024	12824	3	0	1	0	0	2	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0025	12823	3	3	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0026	12853	2	0	0	0	2	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0027	12832	2	0	0	2	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0028	12830	2	0	0	0	1	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0029	12830	2	0	2	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0030	12824	2	0	0	2	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0031	12825	2	0	1	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0032	12828	2	2	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0033	12824	2	0	0	2	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0034	12825	2	0	1	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0035	12827	2	0	0	2	0	0	copy fasta	RAP1B	chr12	68605899	68676901