JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP1B_chr12_68605899_68676901	0/0	t0036	12827	2	0	1	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0037	12818	2	2	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0038	12826	2	2	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0039	12827	2	1	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0040	12825	2	0	0	2	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0041	12823	2	0	0	2	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0042	12822	2	0	0	0	0	2	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0043	12823	2	0	0	2	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0044	12825	2	2	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0045	12824	2	0	0	0	1	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0046	12823	2	0	0	2	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0047	12826	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0048	12851	1	0	0	0	1	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0049	12812	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0050	12825	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0051	12831	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0052	12828	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0053	12832	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0054	12832	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0055	12833	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0056	12830	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0057	12831	1	0	0	0	1	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0058	12830	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0059	12830	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0060	12830	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0061	12827	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0062	12825	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0063	12827	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0064	12825	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0065	12826	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0066	12828	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0067	12827	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0068	12828	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0069	12828	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0070	12828	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0071	12828	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0072	12827	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0073	12827	1	0	0	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0074	12828	1	0	0	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0075	12827	1	0	0	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0076	12826	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0077	12826	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0078	12826	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	1/0	t0079	12824	1	0	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0080	12826	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0081	12826	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0082	12826	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0083	12826	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0084	12825	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0085	12826	1	0	0	0	1	0	copy fasta	RAP1B	chr12	68605899	68676901