JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP1B_chr12_68605899_68676901	0/0	t0086	12828	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0087	12826	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0088	12818	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0089	12824	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0090	12824	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0091	12823	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0092	12824	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0093	12825	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0094	12826	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0095	12824	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0096	12825	1	0	0	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0097	12823	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0098	12823	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0099	12824	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0100	12823	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0101	12823	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0102	12824	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0103	12824	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0104	12823	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0105	12824	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0106	12822	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0107	12823	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0108	12825	1	0	0	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0109	12823	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0110	12824	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0111	12823	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0112	12823	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0113	12822	1	0	0	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0114	12824	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0115	12821	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0116	12822	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0117	12825	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0118	12822	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0119	12823	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0120	12824	1	0	0	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0121	12819	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0122	12824	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0123	12827	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0124	12825	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0125	12827	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0126	12824	1	0	0	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0127	12823	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0128	12839	1	1	0	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0129	12828	1	0	1	0	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0130	12823	1	0	0	0	0	1	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0131	12827	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0132	12826	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1B_chr12_68605899_68676901	0/0	t0133	12823	1	0	0	1	0	0	copy fasta	RAP1B	chr12	68605899	68676901
RAP1GAP2_chr17_2791438_3042741	0/0	t0001	4471	11	1	1	6	0	3	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0002	4471	8	3	4	0	1	0	copy fasta	RAP1GAP2	chr17	2791438	3042741