JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP1GAP2_chr17_2791438_3042741	0/0	t0003	4472	6	5	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0004	4473	6	0	3	3	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0005	4471	5	0	0	3	1	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0006	4482	5	1	1	2	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0007	4472	5	0	1	2	0	2	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	1/0	t0008	4471	5	1	0	2	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0009	4471	3	3	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0010	4483	3	0	2	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0011	4471	3	0	0	1	1	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0012	4471	3	0	0	0	2	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0013	4472	3	0	0	2	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0014	4476	3	0	0	1	0	2	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0015	4471	3	3	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0016	4471	2	2	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0017	4476	2	2	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0018	4470	2	0	0	2	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0019	4471	2	2	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0020	4477	2	0	0	2	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0021	4470	2	0	0	2	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0022	4471	2	0	0	2	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0023	4470	2	0	0	2	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0024	4486	2	0	0	2	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0025	4471	2	2	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0026	4471	2	2	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0027	4471	2	2	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0028	4472	2	0	0	0	0	2	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0029	4471	2	2	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0030	4485	2	0	1	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0031	4483	2	0	0	2	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0032	4481	2	0	2	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0033	4471	2	0	0	1	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0034	4475	2	1	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0035	4478	2	0	0	1	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0036	4477	2	0	0	1	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0037	4473	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0038	4472	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0039	4472	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0040	4471	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0041	4471	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0042	4472	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0043	4472	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0044	4471	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0045	4476	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0046	4476	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0047	4477	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0048	4473	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0049	4473	1	0	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0050	4473	1	0	0	0	1	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0051	4473	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/1	t0052	4471	1	0	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741