JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP1GAP2_chr17_2791438_3042741	0/0	t0103	4471	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0104	4484	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0105	4471	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0106	4482	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0107	4482	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0108	4486	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0109	4485	1	0	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0110	4481	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0111	4472	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0112	4472	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0113	4491	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0114	4488	1	0	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0115	4485	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0116	4483	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0117	4484	1	0	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0118	4485	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0119	4482	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0120	4482	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0121	4473	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0122	4471	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0123	4471	1	0	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0124	4489	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0125	4471	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0126	4483	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0127	4475	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0128	4475	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0129	4490	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0130	4486	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0131	4476	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0132	4478	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0133	4476	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0134	4471	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0135	4471	1	0	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0136	4471	1	0	0	1	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0137	4487	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0138	4476	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0139	4486	1	0	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	t0140	4470	1	1	0	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP_chr1_21591221_21674357	1/0	t0001	1331	277	57	55	127	9	28	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0002	1330	47	10	11	15	4	7	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0003	1331	27	14	6	4	1	2	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/1	t0004	1331	11	6	4	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0005	1330	2	1	0	0	1	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0006	1331	1	0	0	1	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0007	1331	1	0	1	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0008	1331	1	1	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0009	1331	1	0	1	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0010	1330	1	0	0	0	0	1	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0011	1330	1	0	0	1	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	t0012	1331	1	1	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357