JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP1GAP_chr1_21591221_21674357	0/0	t0013	1331	1	0	0	0	1	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GDS1_chr4_98256384_98448858	1/0	t0001	1924	95	14	24	46	1	9	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0002	1925	60	23	14	16	3	4	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0003	1946	15	6	3	5	0	1	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0004	1947	11	3	6	0	1	1	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/1	t0005	1924	7	1	2	0	1	2	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0006	1931	7	6	0	0	0	1	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0007	1926	7	2	0	5	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0008	1926	5	4	1	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0009	1931	5	4	1	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0010	1945	4	2	0	2	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0011	1925	3	3	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0012	1924	3	3	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0013	1938	2	2	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0014	1948	2	0	2	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0015	1924	2	2	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0016	1924	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0017	1934	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0018	1926	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0019	1946	1	0	1	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0020	1924	1	0	0	1	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0021	1924	1	0	0	0	0	1	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0022	1939	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0023	1942	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0024	1945	1	0	0	1	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0025	1949	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0026	1924	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0027	1948	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0028	1964	1	1	0	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	t0029	1924	1	0	0	0	0	1	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP2A_chr13_97429169_97474128	1/0	t0001	4989	86	12	12	50	4	7	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0002	4990	79	10	14	39	3	13	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/1	t0003	4990	73	5	16	37	3	11	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0004	4990	53	30	3	16	0	4	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0005	4989	10	5	1	4	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0006	4988	5	1	3	1	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0007	4989	4	3	1	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0008	4990	4	3	1	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0009	4990	4	0	4	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0010	4990	3	3	0	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0011	4990	3	2	1	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0012	4990	3	3	0	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0013	4990	2	0	0	2	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0014	4990	1	0	0	1	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0015	4989	1	1	0	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0016	4990	1	1	0	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0017	4990	1	1	0	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0018	4990	1	1	0	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0019	4989	1	1	0	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0020	4989	1	0	1	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128