JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP2A_chr13_97429169_97474128	0/0	t0021	4990	1	0	0	0	0	1	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0022	4990	1	1	0	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0023	4990	1	0	0	1	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0024	4990	1	0	0	1	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0025	4990	1	0	1	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0026	4989	1	0	1	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0027	4990	1	1	0	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2A_chr13_97429169_97474128	0/0	t0028	4989	1	0	1	0	0	0	copy fasta	RAP2A	chr13	97429169	97474128
RAP2B_chr3_153157226_153175627	1/0	t0001	7851	63	2	14	31	4	11	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0002	7851	53	6	17	20	2	8	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0003	7852	37	2	11	22	0	2	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0004	7840	23	9	0	14	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0005	7851	14	2	0	12	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0006	7851	12	0	1	9	0	2	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0007	7852	12	0	3	7	0	2	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0008	7851	11	1	3	3	1	3	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0009	7852	10	2	1	6	0	1	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0010	7854	10	0	0	10	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0011	7851	7	0	0	7	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0012	7851	7	0	2	5	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0013	7853	7	1	1	4	0	1	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0014	7841	6	1	0	5	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0015	7853	6	4	2	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0016	7852	5	5	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0017	7852	5	0	1	4	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0018	7852	5	0	2	0	0	3	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0019	7850	4	1	0	3	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0020	7853	4	3	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0021	7850	4	0	1	2	1	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0022	7852	4	4	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0023	7853	4	3	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0024	7853	4	0	2	2	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0025	7851	3	0	1	0	0	2	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0026	7852	3	2	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0027	7849	3	3	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0028	7852	3	0	0	3	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0029	7852	3	0	0	3	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0030	7852	3	2	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0031	7853	2	2	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0032	7846	2	2	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0033	7848	2	1	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0034	7848	2	2	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0035	7853	2	0	0	2	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0036	7840	2	0	1	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0037	7850	2	2	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0038	7850	2	0	0	2	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0039	7851	2	2	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0040	7851	2	2	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0041	7852	2	0	0	2	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0042	7852	2	1	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627