JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP2B_chr3_153157226_153175627	0/0	t0043	7852	2	0	0	2	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0044	7853	2	2	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0045	7852	2	2	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0046	7851	2	0	0	0	1	1	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0047	7868	2	1	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0048	7850	1	0	0	0	1	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0049	7850	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0050	7852	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0051	7851	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0052	7851	1	0	0	0	0	1	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0053	7851	1	0	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0054	7852	1	0	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0055	7853	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0056	7853	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0057	7853	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0058	7852	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0059	7851	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0060	7854	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0061	7840	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0062	7841	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0063	7846	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0064	7848	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0065	7847	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0066	7842	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0067	7847	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0068	7853	1	0	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0069	7853	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0070	7853	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0071	7854	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0072	7851	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0073	7851	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0074	7850	1	0	0	0	0	1	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0075	7850	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0076	7851	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0077	7850	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0078	7851	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0079	7851	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0080	7851	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0081	7852	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0082	7851	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0083	7852	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0084	7852	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0085	7851	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0086	7852	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0087	7852	1	0	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0088	7852	1	0	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0089	7853	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0090	7853	1	0	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0091	7847	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0092	7841	1	0	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627