Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AUNIP_chr1_25829006_25864457	0/0	t0005	1090	11	10	0	1	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0006	1085	8	8	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0007	1086	8	0	4	4	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0008	1087	7	1	0	5	0	1	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0009	1086	6	4	2	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0010	1089	6	0	0	6	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0011	1091	5	4	1	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0012	1086	3	3	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0013	1086	2	2	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0014	1086	2	2	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0015	1088	2	2	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0016	1087	1	0	0	1	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0017	1088	1	0	0	1	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0018	1088	1	0	1	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0019	1091	1	1	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0020	1088	1	1	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0021	1086	1	0	1	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	t0022	1086	1	1	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUP1_chr2_74521652_74534706	1/1	t0001	226	387	98	68	179	10	30	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	t0002	226	1	0	0	1	0	0	copy fasta	AUP1	chr2	74521652	74534706
AURKAIP1_chr1_1368736_1380207	1/1	t0001	154	333	84	69	114	14	50	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	t0002	154	14	0	0	14	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	t0003	154	7	6	1	0	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	t0004	154	3	0	0	3	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	t0005	154	1	0	0	1	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKA_chr20_56364390_56397215	1/0	t0001	822	186	31	32	83	12	27	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	t0002	822	172	56	29	73	2	12	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/1	t0003	822	9	1	1	0	2	4	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	t0004	822	5	5	0	0	0	0	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	t0005	822	4	4	0	0	0	0	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	t0006	820	3	3	0	0	0	0	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	t0007	822	1	0	0	0	0	1	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	t0008	822	1	0	0	1	0	0	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	t0009	822	1	0	0	1	0	0	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	t0010	822	1	0	0	0	0	1	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	t0011	822	1	0	0	0	0	1	copy fasta	AURKA	chr20	56364390	56397215
AURKB_chr17_8199734_8215575	1/1	t0001	209	427	94	81	186	18	46	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	t0002	209	1	0	1	0	0	0	copy fasta	AURKB	chr17	8199734	8215575
AURKC_chr19_57226023_57240548	0/0	t0001	344	176	26	25	107	4	14	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/1	t0002	345	135	31	35	40	8	20	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	t0003	358	39	38	1	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	1/0	t0004	358	27	2	8	6	3	7	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	t0005	359	23	0	0	23	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	t0006	345	5	1	3	0	1	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	t0007	345	1	0	1	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	t0008	344	1	1	0	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	t0009	344	1	0	0	0	0	1	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	t0010	345	1	0	1	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	t0011	345	1	1	0	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AUTS2_chr7_69593475_70798506	0/0	t0001	3690	12	4	4	2	2	0	copy fasta	AUTS2	chr7	69593475	70798506