JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP2B_chr3_153157226_153175627	0/0	t0093	7851	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0094	7852	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0095	7852	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0096	7852	1	0	0	0	0	1	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0097	7853	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0098	7852	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0099	7852	1	0	0	0	0	1	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0100	7853	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0101	7854	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0102	7854	1	0	0	1	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0103	7852	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0104	7849	1	1	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0105	7852	1	0	1	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0106	7852	1	0	0	0	1	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/0	t0107	7853	1	0	0	0	1	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2B_chr3_153157226_153175627	0/1	t0108	7851	1	0	0	0	0	0	copy fasta	RAP2B	chr3	153157226	153175627
RAP2C_chrX_132198025_132224447	0/0	t0001	3411	45	5	8	24	3	5	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0002	3407	26	15	5	3	0	3	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0003	3413	20	2	4	10	0	4	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0004	3402	15	13	1	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0005	3412	11	0	2	8	0	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0006	3414	8	2	1	4	0	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0007	3400	7	1	1	5	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0008	3409	7	3	1	3	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0009	3410	5	0	0	3	0	2	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0010	3415	5	1	0	2	1	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0011	3419	5	1	2	1	1	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0012	3414	5	1	1	3	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0013	3413	5	0	1	0	3	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0014	3403	4	3	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0015	3417	4	1	1	2	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0016	3404	3	2	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0017	3412	3	1	1	0	0	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0018	3405	3	2	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0019	3411	2	2	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0020	3413	2	0	0	2	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0021	3412	2	0	0	2	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/1	t0022	3401	2	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0023	3410	2	0	1	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0024	3416	2	0	1	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0025	3414	2	0	0	0	0	2	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0026	3400	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0027	3415	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0028	3418	1	0	0	0	0	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0029	3412	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0030	3413	1	0	1	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0031	3411	1	0	0	0	0	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0032	3409	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0033	3408	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0034	3407	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447