JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAP2C_chrX_132198025_132224447	0/0	t0035	3403	1	0	0	0	0	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0036	3415	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0037	3396	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0038	3406	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0039	3408	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0040	3418	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0041	3424	1	0	1	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0042	3413	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0043	3411	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0044	3415	1	0	1	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	1/0	t0045	3421	1	0	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0046	3413	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0047	3407	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0048	3403	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0049	3404	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0050	3406	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0051	3408	1	0	0	0	0	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0052	3408	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0053	3410	1	0	1	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0054	3413	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0055	3411	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0056	3407	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0057	3410	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0058	3411	1	1	0	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0059	3415	1	0	0	0	1	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0060	3398	1	0	1	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0061	3417	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0062	3410	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0063	3415	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0064	3416	1	0	0	0	0	1	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	t0065	3412	1	0	1	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAPGEF1_chr9_131571775_131745076	0/0	t0001	2969	108	12	19	63	6	8	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/1	t0002	2969	86	16	18	39	2	10	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0003	2969	58	4	12	25	5	12	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0004	2969	42	25	1	15	0	1	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0005	2969	12	0	5	0	2	5	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0006	2969	10	0	2	8	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0007	2969	5	0	0	5	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0008	2969	4	4	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0009	2969	4	4	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0010	2969	3	1	2	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0011	2964	3	3	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0012	2968	3	2	1	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0013	2969	2	1	0	0	0	1	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0014	2964	2	2	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0015	2969	2	0	0	0	0	2	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0016	2969	2	1	1	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0017	2968	2	2	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0018	2969	2	2	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0019	2969	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076