JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAPGEF1_chr9_131571775_131745076	0/0	t0020	2969	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0021	2969	1	0	0	0	1	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0022	2969	1	0	0	0	0	1	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0023	2968	1	1	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0024	2969	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0025	2969	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0026	2969	1	1	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	1/0	t0027	2969	1	0	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0028	2969	1	0	1	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0029	2969	1	0	0	0	0	1	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0030	2969	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0031	2964	1	1	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0032	2968	1	0	1	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0033	2969	1	1	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0034	2969	1	0	1	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0035	2969	1	0	0	0	0	1	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	t0036	2969	1	1	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF2_chr4_159098079_159365173	0/1	t0001	3117	46	7	22	6	3	7	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0002	3120	43	8	12	14	2	7	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0003	3120	22	11	5	1	2	3	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0004	3119	12	12	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	1/0	t0005	3119	9	7	0	1	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0006	3123	9	0	3	6	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0007	3118	6	5	1	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0008	3119	6	3	1	2	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0009	3118	4	4	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0010	3121	4	4	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0011	3120	3	3	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0012	3122	3	3	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0013	3122	3	3	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0014	3119	2	2	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0015	3123	2	1	1	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0016	3120	2	2	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0017	3119	1	0	1	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0018	3117	1	0	1	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0019	3119	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0020	3120	1	0	0	0	0	1	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0021	3119	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0022	3118	1	0	0	0	1	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0023	3118	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0024	3120	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0025	3118	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0026	3117	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0027	3122	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0028	3123	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0029	3122	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0030	3117	1	0	1	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0031	3118	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0032	3120	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	t0033	3119	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173