JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAPGEF2_chr4_159098079_159365173	0/0	t0034	3119	1	1	0	0	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF3_chr12_47729363_47763880	0/0	t0001	3529	73	6	2	50	4	11	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0002	3529	71	4	15	38	4	10	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0003	3529	66	16	12	28	2	8	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0004	3529	65	12	20	25	1	7	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/1	t0005	3529	28	1	2	22	2	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	1/0	t0006	3529	25	2	3	13	0	6	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0007	3529	18	14	3	0	0	1	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0008	3529	11	1	7	0	2	1	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0009	3529	10	9	1	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0010	3529	7	5	0	2	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0011	3529	5	0	0	5	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0012	3529	5	5	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0013	3529	4	4	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0014	3529	4	1	1	2	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0015	3529	3	3	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0016	3529	3	3	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0017	3529	3	3	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0018	3529	2	0	2	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0019	3529	2	0	0	0	0	2	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0020	3529	2	0	0	2	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0021	3529	2	0	2	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0022	3529	2	0	1	0	1	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0023	3529	1	0	1	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0024	3529	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0025	3529	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0026	3529	1	0	1	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0027	3529	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0028	3529	1	0	0	0	0	1	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0029	3529	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0030	3529	1	0	0	0	1	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0031	3529	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0032	3515	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0033	3529	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0034	3529	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0035	3529	1	0	0	0	1	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0036	3529	1	0	1	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0037	3529	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0038	3529	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0039	3529	1	0	0	0	0	1	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0040	3529	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	t0041	3529	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF4_chr2_172730845_173057893	0/1	t0001	1266	138	34	24	44	5	30	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	t0002	1266	24	9	5	2	1	7	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	t0003	1266	5	5	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	1/0	t0004	1266	4	3	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	t0005	1266	2	2	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	t0006	1266	2	0	0	0	0	2	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	t0007	1266	2	0	1	0	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	t0008	1266	1	1	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893