JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAPGEF5_chr7_22113236_22362154	0/0	t0001	4265	33	2	4	18	2	7	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/1	t0002	4264	14	0	0	10	1	2	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0003	4265	12	0	0	10	0	2	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	1/0	t0004	4265	10	0	3	4	2	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0005	4264	10	2	1	6	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0006	4264	9	1	2	2	2	2	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0007	4264	8	1	4	2	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0008	4264	6	0	2	4	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0009	4266	6	0	1	5	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0010	4265	5	1	1	3	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0011	4268	5	0	0	5	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0012	4264	5	1	0	3	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0013	4264	5	0	0	5	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0014	4263	4	4	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0015	4265	4	0	0	4	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0016	4264	4	0	0	3	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0017	4268	4	1	1	0	0	2	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0018	4268	4	1	2	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0019	4264	3	3	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0020	4268	3	0	0	3	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0021	4265	3	0	2	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0022	4264	2	2	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0023	4264	2	2	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0024	4264	2	2	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0025	4264	2	0	2	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0026	4265	2	0	0	2	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0027	4265	2	0	2	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0028	4264	2	2	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0029	4265	2	2	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0030	4266	2	1	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0031	4265	2	0	0	1	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0032	4265	2	0	0	2	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0033	4266	2	1	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0034	4266	2	0	0	2	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0035	4266	2	0	0	2	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0036	4268	2	0	0	2	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0037	4267	2	0	0	2	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0038	4268	2	0	0	2	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0039	4268	2	1	0	0	1	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0040	4267	2	1	0	0	1	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0041	4268	2	2	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0042	4263	2	2	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0043	4263	2	0	0	1	1	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0044	4263	2	0	0	2	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0045	4268	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0046	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0047	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0048	4264	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0049	4264	1	0	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0050	4265	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154