JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAPGEF5_chr7_22113236_22362154	0/0	t0101	4265	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0102	4266	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0103	4265	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0104	4265	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0105	4265	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0106	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0107	4264	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0108	4265	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0109	4264	1	0	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0110	4265	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0111	4267	1	0	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0112	4265	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0113	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0114	4264	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0115	4265	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0116	4265	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0117	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0118	4265	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0119	4266	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0120	4265	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0121	4266	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0122	4266	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0123	4265	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0124	4265	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0125	4269	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0126	4267	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0127	4269	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0128	4268	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0129	4268	1	0	0	0	1	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0130	4268	1	0	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0131	4267	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0132	4269	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0133	4268	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0134	4268	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0135	4267	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0136	4268	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0137	4268	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0138	4267	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0139	4267	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0140	4267	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0141	4268	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0142	4267	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0143	4268	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0144	4263	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0145	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0146	4263	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0147	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0148	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0149	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0150	4263	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154