JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAPGEF5_chr7_22113236_22362154	0/0	t0151	4263	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0152	4263	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0153	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0154	4264	1	0	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0155	4263	1	0	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0156	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0157	4264	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0158	4265	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0159	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0160	4265	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0161	4265	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0162	4264	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0163	4264	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0164	4263	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0165	4264	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0166	4264	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0167	4264	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0168	4264	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0169	4265	1	0	0	1	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0170	4268	1	0	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	t0171	4264	1	0	1	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF6_chr5_131418921_131640229	1/1	t0001	3545	114	9	27	64	1	11	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0002	3549	96	9	18	58	2	9	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0003	3547	26	19	7	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0004	3550	22	5	4	10	0	3	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0005	3546	20	10	0	6	1	3	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0006	3548	7	1	3	3	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0007	3548	5	4	1	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0008	3546	4	3	1	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0009	3549	2	2	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0010	3547	2	2	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0011	3547	2	2	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0012	3545	2	2	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0013	3545	2	2	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0014	3545	2	2	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0015	3545	2	0	1	1	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0016	3547	2	2	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0017	3546	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0018	3545	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0019	3545	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0020	3547	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0021	3546	1	0	0	1	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0022	3550	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0023	3549	1	0	0	1	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0024	3549	1	0	1	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0025	3548	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0026	3547	1	0	1	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0027	3546	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0028	3545	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	t0029	3545	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229