JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAPGEFL1_chr17_40172470_40200650	0/0	t0050	2241	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0051	2243	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0052	2245	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0053	2247	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0054	2247	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0055	2251	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0056	2255	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0057	2261	1	0	0	0	0	1	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0058	2263	1	0	0	0	0	1	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0059	2267	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0060	2243	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0061	2251	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0062	2253	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0063	2261	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0064	2247	1	0	0	0	1	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0065	2242	1	0	1	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0066	2244	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0067	2246	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0068	2246	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0069	2248	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0070	2256	1	0	0	0	0	1	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0071	2242	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0072	2241	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0073	2253	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0074	2258	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0075	2232	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0076	2221	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0077	2238	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0078	2235	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	t0079	2239	1	1	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPH1_chr2_203428682_203540301	0/0	t0001	5944	47	0	10	32	1	4	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	1/0	t0002	5947	30	5	3	18	2	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0003	5950	12	0	4	5	0	3	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/1	t0004	5950	10	2	4	1	2	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0005	5946	8	4	4	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0006	5964	7	7	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0007	5946	6	0	2	1	0	3	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0008	5947	6	0	0	6	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0009	5950	6	0	5	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0010	5947	5	5	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0011	5943	5	0	0	5	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0012	5947	5	1	0	2	0	2	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0013	5949	5	1	0	4	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0014	5946	4	0	0	4	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0015	5946	4	4	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0016	5946	4	4	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0017	5951	4	4	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0018	5950	4	4	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0019	5943	3	0	1	0	1	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0020	5944	3	0	0	3	0	0	copy fasta	RAPH1	chr2	203428682	203540301