Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AUTS2_chr7_69593475_70798506	0/0	t0002	3690	7	3	0	4	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0003	3690	7	2	0	1	1	3	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0004	3690	5	3	1	0	0	1	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0005	3690	5	1	2	0	0	2	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0006	3696	3	2	1	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0007	3691	3	0	3	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0008	3689	3	2	1	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0009	3690	3	2	0	0	1	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0010	3689	2	1	1	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0011	3695	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0012	3700	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0013	3699	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0014	3697	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0015	3691	1	0	0	0	1	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0016	3684	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0017	3693	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0018	3690	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0019	3690	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0020	3690	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0021	3685	1	0	0	0	1	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0022	3690	1	0	0	1	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0023	3691	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0024	3694	1	0	0	0	0	1	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0025	3690	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0026	3691	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0027	3690	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0028	3686	1	0	0	0	0	1	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0029	3685	1	0	1	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0030	3690	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0031	3689	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0032	3690	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0033	3690	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0034	3690	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0035	3689	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	t0036	3689	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AVEN_chr15_33861227_34044204	1/0	t0001	545	193	59	36	60	6	31	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	t0002	545	33	0	0	32	0	1	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/1	t0003	545	15	2	6	0	2	4	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	t0004	545	12	11	1	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	t0005	545	6	5	1	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	t0006	545	4	4	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	t0007	545	3	3	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVIL_chr12_57792380_57823734	1/1	t0001	628	360	73	76	156	14	39	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	t0002	628	6	6	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	t0003	628	2	2	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	t0004	628	1	1	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	t0005	628	1	0	0	0	0	1	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	t0006	628	1	1	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	t0007	628	1	1	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVL9_chr7_32490489_32593726	0/0	t0001	5039	20	2	4	11	1	2	copy fasta	AVL9	chr7	32490489	32593726