JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAPH1_chr2_203428682_203540301	0/0	t0021	5952	3	3	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0022	5945	3	0	3	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0023	5948	3	0	0	3	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0024	5948	3	0	0	3	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0025	5968	3	0	0	3	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0026	5949	2	2	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0027	5944	2	0	2	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0028	5942	2	2	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0029	5941	2	0	0	2	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0030	5945	2	0	1	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0031	5947	2	0	0	2	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0032	5945	2	0	1	0	1	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0033	5952	2	1	0	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0034	5954	2	2	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0035	5950	2	1	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0036	5960	2	2	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0037	5951	2	0	0	2	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0038	5954	2	2	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0039	5964	2	0	1	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0040	5947	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0041	5939	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0042	5940	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0043	5941	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0044	5952	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0045	5943	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0046	5944	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0047	5945	1	0	0	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0048	5946	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0049	5946	1	0	0	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0050	5953	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0051	5952	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0052	5949	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0053	5951	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0054	5949	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0055	5945	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0056	5945	1	0	0	0	1	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0057	5967	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0058	5956	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0059	5949	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0060	5951	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0061	5951	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0062	5947	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0063	5963	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0064	5947	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0065	5947	1	0	0	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0066	5950	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0067	5950	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0068	5953	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0069	5961	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0070	5951	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301