JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RAPH1_chr2_203428682_203540301	0/0	t0071	5954	1	0	0	0	1	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0072	5954	1	0	0	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0073	5954	1	0	0	0	1	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0074	5956	1	0	0	0	1	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0075	5955	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0076	5948	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0077	5948	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0078	5960	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0079	5950	1	0	0	0	1	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0080	5947	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0081	5951	1	0	0	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0082	5954	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0083	5957	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0084	5954	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0085	5952	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0086	5952	1	0	0	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0087	5951	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0088	5951	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0089	5951	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0090	5954	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0091	5964	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0092	5972	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0093	5966	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0094	5962	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0095	5976	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0096	5972	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0097	5972	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0098	5968	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0099	5968	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0100	5958	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0101	5968	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0102	5964	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0103	5968	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0104	5966	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0105	5967	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0106	5973	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0107	5958	1	0	0	0	0	1	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	t0108	5976	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPSN_chr11_47432764_47454136	1/1	t0001	384	365	80	50	183	11	39	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	t0002	384	26	1	15	2	5	3	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	t0003	384	5	5	0	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	t0004	384	3	0	3	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	t0005	384	2	2	0	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	t0006	384	1	0	0	1	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RARA_chr17_40304180_40362643	1/1	t0001	1887	258	71	52	95	8	30	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0002	1887	4	4	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0003	1887	3	3	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0004	1887	3	0	2	0	1	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0005	1887	3	0	0	3	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0006	1887	2	1	1	0	0	0	copy fasta	RARA	chr17	40304180	40362643