JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RARA_chr17_40304180_40362643	0/0	t0007	1887	2	0	0	2	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0008	1887	2	2	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0009	1887	2	0	1	0	1	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0010	1887	1	1	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0011	1887	1	0	0	1	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0012	1887	1	1	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0013	1887	1	1	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0014	1887	1	1	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0015	1887	1	0	0	1	0	0	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	t0016	1887	1	1	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643
RARB_chr3_25423263_25602932	1/1	t0001	1786	151	40	34	57	3	15	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0002	1783	55	20	9	22	1	3	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0003	1787	26	0	2	23	0	1	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0004	1791	14	1	8	0	1	4	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0005	1785	11	10	1	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0006	1784	5	3	2	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0007	1783	3	3	0	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0008	1784	2	0	2	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0009	1786	2	0	2	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0010	1782	2	1	1	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0011	1787	2	2	0	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0012	1787	2	0	0	0	1	1	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0013	1783	1	1	0	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0014	1792	1	0	1	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0015	1788	1	0	0	1	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0016	1787	1	0	0	1	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0017	1790	1	1	0	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0018	1787	1	1	0	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0019	1782	1	0	0	1	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0020	1786	1	0	0	1	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0021	1790	1	0	0	0	0	1	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0022	1790	1	0	0	0	0	1	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0023	1787	1	0	0	1	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0024	1786	1	0	0	1	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0025	1774	1	0	1	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0026	1783	1	0	1	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARB_chr3_25423263_25602932	0/0	t0027	1784	1	1	0	0	0	0	copy fasta	RARB	chr3	25423263	25602932
RARG_chr12_53205569_53237209	0/0	t0001	1553	165	22	39	80	2	22	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0002	1553	95	40	7	30	1	17	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0003	1553	37	16	6	9	1	5	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0004	1553	24	1	6	17	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0005	1553	8	7	0	1	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0006	1553	6	6	0	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0007	1553	5	0	0	5	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0008	1553	4	0	4	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0009	1553	2	0	0	2	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0010	1553	2	2	0	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0011	1553	1	1	0	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0012	1553	1	1	0	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0013	1553	1	0	0	1	0	0	copy fasta	RARG	chr12	53205569	53237209