JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RARG_chr12_53205569_53237209	0/0	t0014	1553	1	0	0	1	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0015	1553	1	0	0	1	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0016	1553	1	0	0	1	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0017	1553	1	0	1	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	t0018	1553	1	0	1	0	0	0	copy fasta	RARG	chr12	53205569	53237209
RARRES1_chr3_158691892_158737457	1/1	t0001	829	281	61	53	120	14	31	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	t0002	826	70	9	10	39	4	8	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	t0003	829	12	12	0	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	t0004	828	8	7	1	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	t0005	829	5	4	1	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	t0006	828	1	0	1	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	t0007	826	1	0	0	0	0	1	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	t0008	829	1	0	0	1	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	t0009	829	1	1	0	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES2_chr7_150333329_150346629	1/0	t0001	194	162	23	34	76	6	22	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/1	t0002	194	119	12	14	77	5	10	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0003	194	83	34	6	34	1	8	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0004	194	23	12	0	10	0	1	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0005	194	8	7	0	1	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0006	194	2	0	2	0	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0007	194	2	2	0	0	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0008	194	1	1	0	0	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0009	194	1	0	0	1	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0010	194	1	1	0	0	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0011	194	1	0	0	0	0	1	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	t0012	194	1	0	0	1	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARS1_chr5_168481471_168524301	1/1	t0001	140	354	90	61	147	10	44	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	t0002	140	38	4	11	21	0	2	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	t0003	140	2	2	0	0	0	0	copy fasta	RARS1	chr5	168481471	168524301
RARS2_chr6_87508938_87594987	1/0	t0001	506	132	20	21	64	7	19	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0002	505	119	16	26	59	6	12	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0003	506	47	10	13	21	2	1	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/1	t0004	507	37	8	5	18	0	5	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0005	506	25	17	3	3	1	1	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0006	506	9	6	2	1	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0007	506	3	3	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0008	505	2	2	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0009	506	2	2	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0010	505	1	1	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0011	506	1	1	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0012	506	1	1	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0013	507	1	1	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0014	506	1	0	0	0	0	1	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	t0015	506	1	0	0	0	0	1	copy fasta	RARS2	chr6	87508938	87594987
RASA1_chr5_87262883_87396916	1/1	t0001	1603	159	39	32	59	7	20	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0002	1604	85	12	12	48	1	12	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0003	1603	14	9	3	0	2	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0004	1600	7	7	0	0	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0005	1604	4	0	0	4	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0006	1604	3	2	1	0	0	0	copy fasta	RASA1	chr5	87262883	87396916