JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASA1_chr5_87262883_87396916	0/0	t0007	1601	3	3	0	0	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0008	1604	2	0	0	2	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0009	1604	1	0	1	0	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0010	1604	1	0	0	1	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0011	1603	1	0	1	0	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0012	1603	1	1	0	0	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	t0013	1603	1	1	0	0	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA2_chr3_141482027_141620344	0/1	t0001	3089	88	20	17	47	0	3	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	1/0	t0002	3089	57	15	7	28	1	5	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0003	3089	47	10	14	9	6	8	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0004	3089	43	0	9	25	3	6	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0005	3089	19	17	2	0	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0006	3089	8	8	0	0	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0007	3089	6	6	0	0	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0008	3089	3	0	1	0	2	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0009	3089	2	0	0	0	0	2	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0010	3089	1	0	1	0	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0011	3089	1	0	0	1	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0012	3089	1	0	0	0	0	1	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0013	3089	1	0	1	0	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0014	3089	1	0	0	0	0	1	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0015	3089	1	0	0	1	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	t0016	3089	1	0	0	1	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA3_chr13_113972783_114137623	1/0	t0001	1699	36	14	9	7	0	5	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	t0002	1699	17	2	7	5	0	3	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	t0003	1699	4	0	2	2	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	t0004	1699	3	3	0	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	t0005	1699	2	2	0	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	t0006	1699	2	0	2	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	t0007	1699	1	0	1	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	t0008	1699	1	0	1	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	t0009	1699	1	1	0	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA4B_chr7_102474976_102522777	0/0	t0001	3686	11	0	4	6	1	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0002	3684	8	6	0	1	0	1	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0003	3705	6	1	2	1	2	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0004	3700	4	2	2	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0005	3685	3	0	3	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0006	3687	3	1	0	2	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	1/0	t0007	3684	2	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0008	3684	2	0	1	0	0	1	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0009	3675	2	2	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0010	3705	2	2	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0011	3684	2	0	1	1	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0012	3705	1	0	0	1	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0013	3686	1	0	0	1	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0014	3686	1	0	0	0	0	1	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0015	3705	1	0	0	0	1	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0016	3700	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0017	3700	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	t0018	3701	1	1	0	0	0	0	copy fasta	RASA4B	chr7	102474976	102522777