JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASA4_chr7_102574646_102621756	0/0	t0044	3201	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0045	3193	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0046	3194	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0047	3191	1	0	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0048	3193	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0049	3194	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0050	3195	1	0	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0051	3189	1	0	1	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0052	3193	1	0	1	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0053	3193	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0054	3193	1	0	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0055	3193	1	0	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0056	3194	1	0	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0057	3190	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0058	3194	1	0	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0059	3194	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0060	3194	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0061	3190	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	t0062	3194	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASAL1_chr12_113094278_113140761	0/1	t0001	951	235	62	50	85	10	27	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	1/0	t0002	951	62	9	3	42	1	6	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	t0003	951	5	5	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	t0004	951	5	1	1	0	2	1	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	t0005	951	3	2	0	0	0	1	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	t0006	951	2	2	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	t0007	951	1	0	0	0	1	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	t0008	951	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	t0009	951	1	0	0	1	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	t0010	951	1	0	0	0	0	1	copy fasta	RASAL1	chr12	113094278	113140761
RASAL2_chr1_178089104_178483850	0/0	t0001	6001	53	13	14	19	2	5	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0002	5999	37	10	10	13	2	2	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0003	6005	26	22	4	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0004	6001	8	0	3	2	0	3	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0005	6001	8	0	0	8	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0006	6001	7	6	1	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0007	6000	5	5	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/1	t0008	6001	4	2	0	0	0	1	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0009	6001	4	4	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0010	5997	3	1	1	0	0	1	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0011	6005	2	2	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0012	5999	2	0	2	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0013	6001	2	2	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0014	6001	2	2	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0015	6001	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0016	6001	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0017	6005	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	1/0	t0018	6001	1	0	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0019	6005	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0020	5999	1	0	1	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0021	6327	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850