JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASAL2_chr1_178089104_178483850	0/0	t0022	6001	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0023	6001	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0024	6001	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0025	6001	1	0	1	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0026	6001	1	0	1	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0027	6001	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0028	5997	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0029	6001	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0030	6001	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	t0031	5999	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL3_chr19_15446624_15469544	1/1	t0001	231	263	40	56	125	11	29	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0002	232	51	5	15	20	2	9	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0003	230	46	25	7	6	5	3	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0004	231	9	9	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0005	231	5	5	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0006	232	3	3	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0007	230	2	2	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0008	231	2	2	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0009	231	1	0	0	0	0	1	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0010	230	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	t0011	231	1	0	0	1	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASD1_chr17_17489437_17501395	0/0	t0001	903	192	44	25	107	3	13	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/1	t0002	903	104	13	28	40	9	13	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0003	903	43	8	11	15	0	9	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0004	903	34	27	1	0	1	5	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0005	903	22	1	14	2	3	2	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	1/0	t0006	903	21	0	2	17	0	1	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0007	903	4	0	0	4	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0008	903	3	0	0	3	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0009	903	3	0	0	3	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0010	903	2	2	0	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0011	903	2	2	0	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0012	903	1	0	1	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0013	903	1	0	0	0	0	1	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0014	903	1	0	0	1	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	t0015	903	1	1	0	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD2_chr22_35535831_35558999	1/0	t0001	2647	129	24	26	56	11	11	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0002	2647	106	16	5	70	0	15	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0003	2647	46	1	13	29	0	3	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0004	2647	28	1	10	3	2	12	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/1	t0005	2647	11	6	2	0	2	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0006	2649	10	0	10	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0007	2647	8	8	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0008	2647	8	8	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0009	2647	8	7	1	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0010	2647	5	0	3	0	1	1	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0011	2648	3	0	1	0	0	2	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0012	2648	3	1	1	0	0	1	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0013	2648	3	0	0	3	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0014	2647	3	0	3	0	0	0	copy fasta	RASD2	chr22	35535831	35558999