JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASD2_chr22_35535831_35558999	0/0	t0015	2647	3	2	1	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0016	2647	2	0	0	2	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0017	2647	2	0	0	0	0	2	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0018	2647	2	0	0	0	2	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0019	2647	2	2	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0020	2647	2	2	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0021	2647	2	1	1	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0022	2647	2	0	0	2	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0023	2647	2	0	0	2	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0024	2635	1	0	0	1	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0025	2648	1	0	1	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0026	2648	1	0	1	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0027	2648	1	1	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0028	2648	1	0	1	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0029	2648	1	1	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0030	2647	1	0	0	0	0	1	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0031	2647	1	1	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0032	2647	1	0	0	1	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0033	2647	1	1	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0034	2647	1	1	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0035	2647	1	1	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0036	2647	1	1	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0037	2647	1	0	0	0	0	1	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0038	2647	1	0	0	0	0	1	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0039	2647	1	1	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0040	2647	1	0	0	1	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0041	2647	1	0	0	1	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0042	2647	1	0	0	1	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	t0043	2647	1	1	0	0	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASEF_chr9_82974590_83068142	0/1	t0001	3347	139	7	23	91	2	15	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	1/0	t0002	3363	82	11	21	34	5	10	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0003	3353	24	12	4	3	3	2	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0004	3347	14	0	0	11	0	3	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0005	3363	8	7	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0006	3358	7	7	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0007	3353	6	5	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0008	3358	5	5	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0009	3364	5	5	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0010	3357	5	5	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0011	3357	3	3	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0012	3344	3	2	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0013	3363	2	1	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0014	3357	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0015	3357	2	1	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0016	3347	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0017	3347	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0018	3347	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0019	3347	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0020	3363	1	0	0	1	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0021	3347	1	0	0	1	0	0	copy fasta	RASEF	chr9	82974590	83068142