JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASEF_chr9_82974590_83068142	0/0	t0022	3357	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0023	3364	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0024	3358	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0025	3363	1	0	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0026	3363	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0027	3357	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0028	3363	1	0	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0029	3363	1	0	0	1	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0030	3358	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0031	3347	1	0	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0032	3347	1	0	0	1	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0033	3363	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0034	3358	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0035	3347	1	0	0	1	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0036	3363	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0037	3363	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	t0038	3353	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASGEF1A_chr10_43189535_43272065	0/1	t0001	1939	242	80	47	79	12	23	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0002	1939	53	0	9	38	1	5	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0003	1939	27	1	5	19	0	2	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0004	1939	8	1	2	0	0	5	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0005	1939	6	3	3	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0006	1939	2	2	0	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0007	1939	1	0	0	0	0	1	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0008	1939	1	0	0	0	0	1	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0009	1939	1	0	0	0	0	1	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0010	1939	1	0	1	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0011	1939	1	0	0	0	1	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	1/0	t0012	1937	1	0	0	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0013	1939	1	1	0	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0014	1939	1	1	0	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0015	1939	1	1	0	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0016	1939	1	0	1	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0017	1939	1	0	0	1	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	t0018	1939	1	0	0	1	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1B_chr4_81421393_81476907	1/0	t0001	1520	122	13	35	46	13	14	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/1	t0002	1518	52	15	4	22	1	9	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0003	1519	35	7	5	15	0	8	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0004	1521	24	3	4	16	0	1	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0005	1516	23	11	5	0	2	5	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0006	1517	23	16	3	3	0	1	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0007	1517	6	6	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0008	1515	6	0	0	4	0	2	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0009	1520	5	5	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0010	1518	4	2	2	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0011	1521	2	2	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0012	1518	2	0	0	2	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0013	1520	2	2	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0014	1520	1	0	1	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0015	1517	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907