Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AVL9_chr7_32490489_32593726	0/0	t0002	5040	13	3	3	4	1	2	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0003	5038	10	2	0	7	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0004	5039	9	3	0	4	0	2	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0005	5042	8	3	1	4	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0006	5043	8	0	1	5	1	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0007	5038	8	1	3	3	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0008	5041	7	0	3	1	0	3	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0009	5039	7	2	3	0	0	2	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0010	5041	7	0	1	6	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0011	5044	6	1	1	4	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0012	5041	6	3	1	0	0	2	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0013	5042	6	1	2	3	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0014	5040	6	0	4	0	0	2	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0015	5041	5	0	0	5	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0016	5039	5	4	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0017	5040	5	2	1	2	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0018	5040	5	0	5	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0019	5043	4	1	1	2	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0020	5039	4	0	0	4	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0021	5043	4	1	2	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0022	5038	4	1	0	0	2	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0023	5042	3	2	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0024	5038	3	0	1	0	1	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0025	5044	3	1	0	1	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0026	5044	3	1	1	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0027	5045	3	0	0	1	0	2	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0028	5041	3	2	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0029	5042	3	0	1	1	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0030	5038	3	1	0	1	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0031	5040	3	3	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0032	5042	3	0	0	3	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0033	5038	3	0	0	3	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0034	5039	3	0	0	3	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0035	5041	3	3	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0036	5037	2	0	2	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0037	5041	2	2	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0038	5043	2	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0039	5045	2	0	0	2	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0040	5042	2	0	1	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0041	5042	2	2	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0042	5042	2	2	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0043	5040	2	0	1	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0044	5040	2	0	0	2	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0045	5039	2	0	1	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0046	5043	2	0	0	2	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0047	5040	2	0	0	2	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0048	5040	2	0	0	2	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0049	5037	2	0	1	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0050	5035	2	0	0	2	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0051	5037	2	1	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726