JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASGEF1B_chr4_81421393_81476907	0/0	t0016	1518	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0017	1518	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0018	1518	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0019	1519	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0020	1520	1	0	1	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0021	1521	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0022	1520	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	t0023	1521	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1C_chr5_180095795_180214211	0/1	t0001	875	80	7	24	25	5	18	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0002	881	31	1	0	23	3	4	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0003	874	23	7	8	3	2	3	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0004	875	18	1	4	8	0	5	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0005	877	16	3	4	7	1	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0006	890	15	5	4	1	0	5	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0007	878	11	0	1	9	1	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0008	872	11	10	1	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0009	887	9	2	0	6	0	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0010	883	8	0	0	8	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0011	884	7	4	0	3	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0012	876	7	1	4	2	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0013	875	6	6	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0014	871	5	3	2	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0015	889	4	2	2	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0016	891	4	0	2	0	2	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0017	892	4	0	4	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0018	927	4	0	0	0	1	3	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0019	886	4	0	2	2	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0020	885	4	2	1	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0021	881	4	0	0	3	0	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0022	876	4	0	2	1	0	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0023	872	4	4	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0024	893	3	2	1	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0025	890	3	0	2	0	0	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0026	887	3	0	0	3	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0027	882	3	0	2	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0028	882	3	0	2	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0029	875	3	0	0	3	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0030	872	3	3	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0031	896	2	0	0	0	0	2	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0032	932	2	0	0	2	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0033	930	2	0	1	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0034	892	2	2	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0035	887	2	2	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0036	880	2	0	1	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0037	880	2	0	0	1	0	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0038	877	2	0	0	2	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0039	875	2	2	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0040	875	2	2	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0041	872	2	1	1	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0042	890	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211