JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASGEF1C_chr5_180095795_180214211	0/0	t0043	876	1	0	1	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0044	896	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	1/0	t0045	897	1	0	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0046	897	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0047	896	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0048	896	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0049	893	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0050	894	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0051	894	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0052	893	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0053	929	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0054	930	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0055	930	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0056	890	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0057	891	1	0	1	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0058	890	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0059	887	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0060	888	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0061	889	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0062	889	1	0	1	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0063	887	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0064	887	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0065	887	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0066	883	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0067	884	1	0	0	0	0	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0068	886	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0069	886	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0070	881	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0071	881	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0072	881	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0073	877	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0074	879	1	0	0	0	0	1	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0075	879	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0076	875	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0077	875	1	0	0	0	1	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0078	876	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0079	875	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0080	872	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0081	873	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0082	874	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0083	872	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0084	872	1	0	0	1	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	t0085	872	1	1	0	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGRF1_chr15_78954906_79095780	0/1	t0001	2521	188	35	37	69	12	34	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0002	2521	44	0	6	38	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0003	2523	32	12	12	4	1	3	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0004	2517	21	20	1	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	1/0	t0005	2521	5	3	1	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0006	2521	5	5	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0007	2523	4	0	2	0	1	1	copy fasta	RASGRF1	chr15	78954906	79095780