JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASGRF1_chr15_78954906_79095780	0/0	t0008	2521	4	4	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0009	2521	3	3	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0010	2521	2	2	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0011	2521	1	1	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0012	2521	1	1	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0013	2521	1	0	0	1	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0014	2521	1	0	0	1	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0015	2521	1	0	1	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	t0016	2523	1	0	0	1	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF2_chr5_80955363_81235162	0/0	t0001	4769	48	18	3	21	1	5	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	1/1	t0002	4769	45	7	8	24	1	3	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0003	4769	21	6	3	6	2	4	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0004	4769	16	7	6	0	3	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0005	4769	15	7	3	0	0	5	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0006	4769	13	4	7	0	1	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0007	4769	12	0	2	9	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0008	4769	11	8	0	0	0	3	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0009	4769	10	2	2	6	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0010	4769	9	4	3	0	0	2	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0011	4769	6	3	3	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0012	4769	5	2	2	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0013	4769	4	0	1	1	2	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0014	4769	3	2	0	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0015	4769	3	3	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0016	4769	3	0	2	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0017	4769	3	3	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0018	4769	2	0	1	0	1	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0019	4769	2	2	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0020	4769	2	1	1	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0021	4769	2	0	0	2	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0022	4769	2	0	0	2	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0023	4769	2	0	0	2	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0024	4769	2	0	1	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0025	4769	2	0	1	0	1	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0026	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0027	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0028	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0029	4769	1	0	0	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0030	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0031	4769	1	0	0	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0032	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0033	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0034	4769	1	0	0	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0035	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0036	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0037	4769	1	0	0	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0038	4769	1	0	0	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0039	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0040	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0041	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162