JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASGRF2_chr5_80955363_81235162	0/0	t0042	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0043	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0044	4769	1	0	1	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0045	4769	1	0	0	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0046	4769	1	0	1	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0047	4769	1	0	1	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0048	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0049	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0050	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0051	4769	1	0	0	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0052	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0053	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0054	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0055	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0056	4769	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0057	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	t0058	4769	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRP1_chr15_38483103_38569814	0/1	t0001	2640	90	11	14	46	6	12	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	1/0	t0002	2638	77	31	12	23	5	5	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0003	2639	36	1	8	23	0	4	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0004	2640	26	22	3	0	0	1	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0005	2640	23	0	3	17	2	1	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0006	2639	15	3	4	1	3	4	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0007	2638	13	0	1	12	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0008	2638	10	2	6	2	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0009	2639	9	0	1	8	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0010	2640	7	7	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0011	2639	6	2	3	0	0	1	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0012	2640	5	0	2	1	0	2	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0013	2640	5	5	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0014	2641	3	3	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0015	2641	3	0	0	3	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0016	2638	3	3	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0017	2641	2	2	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0018	2641	1	1	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0019	2639	1	0	0	0	0	1	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0020	2641	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0021	2640	1	0	0	0	0	1	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0022	2639	1	0	1	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0023	2640	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0024	2639	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0025	2640	1	0	1	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0026	2638	1	0	1	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0027	2641	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0028	2640	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0029	2639	1	1	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0030	2639	1	1	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0031	2638	1	1	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0032	2638	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	t0033	2638	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814