JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASGRP1_chr15_38483103_38569814	0/0	t0034	2639	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP2_chr11_64721911_64749142	1/1	t0001	439	293	88	40	121	10	32	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	t0002	439	1	0	0	1	0	0	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP3_chr2_33471649_33569731	0/0	t0001	2310	104	0	7	93	0	4	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0002	2307	47	1	12	27	2	5	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0003	2303	27	3	5	11	3	5	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0004	2308	18	2	2	10	1	3	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0005	2303	15	15	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0006	2307	13	11	2	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0007	2303	12	0	3	8	0	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0008	2308	9	0	1	3	0	5	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0009	2308	9	2	3	0	2	2	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0010	2307	8	0	0	8	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0011	2303	7	7	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0012	2299	6	6	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0013	2298	5	5	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0014	2303	4	4	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0015	2303	4	0	0	4	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0016	2310	4	0	0	4	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0017	2303	3	3	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0018	2303	3	1	0	2	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0019	2303	3	3	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0020	2309	3	2	1	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	1/0	t0021	2314	3	1	0	0	1	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0022	2303	2	2	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0023	2307	2	1	1	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0024	2303	2	2	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/1	t0025	2305	2	0	0	0	0	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0026	2303	2	2	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0027	2303	2	2	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0028	2303	2	2	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0029	2307	2	0	0	0	2	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0030	2308	2	0	0	1	0	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0031	2299	2	2	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0032	2310	2	0	1	0	0	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0033	2309	2	0	2	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0034	2310	2	0	0	2	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0035	2310	2	0	0	2	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0036	2314	2	0	1	0	0	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0037	2314	2	0	0	2	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0038	2310	2	0	0	2	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0039	2310	2	0	0	2	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0040	2309	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0041	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0042	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0043	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0044	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0045	2307	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0046	2308	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0047	2311	1	0	1	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731