JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASGRP3_chr2_33471649_33569731	0/0	t0048	2313	1	0	1	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0049	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0050	2304	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0051	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0052	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0053	2307	1	0	0	0	1	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0054	2307	1	0	1	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0055	2302	1	0	1	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0056	2307	1	0	1	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0057	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0058	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0059	2303	1	1	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0060	2305	1	0	0	0	0	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0061	2309	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0062	2308	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0063	2310	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0064	2314	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0065	2307	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	t0066	2303	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP4_chr19_38404058_38431219	1/1	t0001	1111	285	50	64	122	11	36	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0002	1111	47	1	5	41	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0003	1111	12	10	1	0	1	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0004	1112	8	0	1	1	0	6	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0005	1112	7	0	0	7	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0006	1111	5	5	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0007	1112	5	0	0	5	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0008	1112	4	1	2	0	0	1	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0009	1113	4	4	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0010	1112	3	2	0	0	0	1	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0011	1112	2	2	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0012	1111	2	2	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0013	1111	2	2	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0014	1111	2	2	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0015	1111	2	0	0	2	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0016	1112	2	2	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0017	1111	1	0	1	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0018	1112	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0019	1111	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0020	1111	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0021	1111	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0022	1112	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0023	1111	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0024	1111	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0025	1111	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0026	1112	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0027	1111	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0028	1112	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0029	1113	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0030	1111	1	0	0	0	0	1	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0031	1111	1	0	0	0	0	1	copy fasta	RASGRP4	chr19	38404058	38431219