JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASGRP4_chr19_38404058_38431219	0/0	t0032	1112	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0033	1112	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	t0034	1112	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASIP1_chr19_48715585_48745610	1/1	t0001	308	356	84	60	156	10	44	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	t0002	308	6	6	0	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	t0003	308	2	2	0	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASL10A_chr22_29307933_29320697	0/1	t0001	820	411	83	68	196	15	48	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	t0002	820	6	6	0	0	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	t0003	820	4	1	2	0	1	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	t0004	820	2	2	0	0	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	t0005	820	1	0	1	0	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	t0006	820	1	1	0	0	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	t0007	820	1	0	1	0	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	t0008	820	1	0	0	1	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	1/0	t0009	820	1	0	0	0	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	t0010	820	1	1	0	0	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10A_chr22_29307933_29320697	0/0	t0011	820	1	0	0	1	0	0	copy fasta	RASL10A	chr22	29307933	29320697
RASL10B_chr17_35726639_35748521	1/1	t0001	2604	201	24	45	91	13	26	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0002	2603	61	22	6	30	1	2	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0003	2603	59	1	2	50	1	5	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0004	2603	46	15	7	20	1	3	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0005	2603	15	0	3	6	0	6	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0006	2604	12	10	2	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0007	2604	10	1	9	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0008	2603	8	8	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0009	2603	5	5	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0010	2603	3	3	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0011	2604	3	0	0	3	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0012	2604	2	0	2	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0013	2604	2	0	0	2	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0014	2603	2	0	0	2	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0015	2604	2	2	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0016	2604	2	2	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0017	2603	1	0	0	1	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0018	2603	1	0	0	1	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0019	2603	1	1	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0020	2603	1	1	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0021	2603	1	1	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0022	2604	1	0	0	1	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0023	2603	1	1	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0024	2603	1	0	1	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0025	2603	1	0	0	1	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0026	2604	1	0	1	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0027	2604	1	1	0	0	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0028	2603	1	0	0	1	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	t0029	2604	1	0	0	1	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL11A_chr13_27265830_27280192	0/0	t0001	1813	102	21	21	47	4	9	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0002	1814	101	15	14	59	1	12	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	1/0	t0003	1814	52	18	10	20	1	2	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/1	t0004	1813	34	0	9	13	4	7	copy fasta	RASL11A	chr13	27265830	27280192