JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASL11A_chr13_27265830_27280192	0/0	t0005	1815	29	3	5	17	0	4	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0006	1815	14	8	1	4	0	1	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0007	1812	12	8	2	1	0	1	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0008	1813	9	1	1	5	2	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0009	1814	8	0	4	0	2	2	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0010	1814	6	0	4	2	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0011	1816	6	5	0	1	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0012	1809	5	4	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0013	1812	5	4	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0014	1810	4	3	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0015	1814	3	3	0	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0016	1812	2	0	1	0	0	1	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0017	1814	2	1	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0018	1816	2	0	0	2	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0019	1813	2	0	0	2	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0020	1813	1	0	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0021	1802	1	0	0	0	0	1	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0022	1809	1	0	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0023	1814	1	0	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0024	1813	1	1	0	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0025	1815	1	1	0	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0026	1815	1	1	0	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0027	1816	1	1	0	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0028	1816	1	0	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	t0029	1814	1	0	0	1	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11B_chr4_52857317_52871835	1/1	t0001	1222	270	50	59	122	10	27	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0002	1221	73	14	2	47	3	7	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0003	1222	59	19	12	14	5	9	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0004	1222	4	2	2	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0005	1222	3	3	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0006	1222	3	0	0	3	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0007	1222	2	1	0	0	0	1	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0008	1221	1	0	0	1	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0009	1222	1	1	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0010	1221	1	0	0	1	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0011	1221	1	1	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0012	1221	1	1	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0013	1222	1	1	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0014	1222	1	0	0	1	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0015	1222	1	0	0	1	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0016	1222	1	0	1	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0017	1221	1	1	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0018	1185	1	0	0	1	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0019	1222	1	0	0	1	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0020	1222	1	0	0	1	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	t0021	1222	1	0	0	1	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL12_chr15_65048337_65072991	0/1	t0001	1719	273	61	57	115	15	24	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	1/0	t0002	1719	26	5	12	4	3	1	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0003	1719	22	20	2	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0004	1719	3	0	0	3	0	0	copy fasta	RASL12	chr15	65048337	65072991