JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASL12_chr15_65048337_65072991	0/0	t0005	1719	2	2	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0006	1719	2	2	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0007	1719	2	2	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0008	1719	2	2	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0009	1719	2	0	0	1	0	1	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0010	1719	1	0	0	1	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0011	1719	1	1	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0012	1719	1	1	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	t0013	1719	1	0	1	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASSF10_chr11_13004316_13017119	0/0	t0001	1280	275	60	39	139	9	28	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/1	t0002	1280	115	24	27	48	6	9	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0003	1279	13	4	6	0	3	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0004	1281	10	1	2	6	0	1	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0005	1281	2	0	0	1	0	1	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0006	1280	1	0	1	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0007	1266	1	1	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0008	1279	1	1	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0009	1279	1	1	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0010	1280	1	0	0	1	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0011	1280	1	0	0	1	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0012	1280	1	1	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	1/0	t0013	1281	1	0	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0014	1280	1	0	1	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0015	1280	1	0	0	0	0	1	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	t0016	1280	1	1	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF1_chr3_50324788_50345836	1/1	t0001	825	256	55	56	89	13	41	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	t0002	825	109	13	20	75	0	1	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	t0003	825	13	11	2	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	t0004	825	6	6	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	t0005	825	3	3	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	t0006	825	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	t0007	825	1	0	0	0	1	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	t0008	825	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF2_chr20_4775023_4828608	0/0	t0001	4411	75	5	9	50	6	5	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0002	4411	70	7	16	39	1	7	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0003	4410	43	6	3	27	3	4	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0004	4412	35	3	6	23	1	2	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0005	4410	18	4	1	10	0	3	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0006	4410	13	2	7	0	0	4	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	1/1	t0007	4410	12	0	1	3	0	6	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0008	4410	12	3	1	2	2	4	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0009	4411	11	0	3	7	0	1	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0010	4409	9	8	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0011	4410	8	1	4	0	2	1	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0012	4412	7	7	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0013	4410	6	0	5	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0014	4410	5	4	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0015	4411	4	0	1	3	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0016	4411	4	4	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0017	4412	4	4	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608