JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASSF2_chr20_4775023_4828608	0/0	t0018	4412	3	1	2	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0019	4411	3	2	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0020	4410	3	0	2	0	0	1	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0021	4397	3	3	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0022	4410	3	0	0	3	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0023	4411	3	0	0	3	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0024	4411	3	2	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0025	4411	3	0	0	3	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0026	4412	3	3	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0027	4410	3	3	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0028	4411	3	3	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0029	4410	2	0	0	0	0	2	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0030	4410	2	0	0	0	0	2	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0031	4410	2	0	2	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0032	4410	2	2	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0033	4410	2	0	0	0	1	1	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0034	4411	2	0	2	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0035	4409	2	2	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0036	4411	2	1	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0037	4411	2	0	0	0	2	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0038	4411	2	2	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0039	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0040	4410	1	0	0	0	0	1	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0041	4411	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0042	4410	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0043	4410	1	0	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0044	4410	1	0	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0045	4412	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0046	4412	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0047	4411	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0048	4410	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0049	4412	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0050	4398	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0051	4399	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0052	4411	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0053	4410	1	0	0	0	0	1	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0054	4410	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0055	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0056	4410	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0057	4411	1	0	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0058	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0059	4410	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0060	4411	1	0	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0061	4409	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0062	4411	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0063	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0064	4410	1	0	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0065	4410	1	0	0	0	0	1	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0066	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0067	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608