Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACER3_chr11_76855918_77031797	0/0	t0067	6529	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0068	6529	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0069	6528	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0070	6522	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0071	6518	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0072	6518	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0073	6526	1	0	0	0	1	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0074	6515	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0075	6521	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0076	6531	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0077	6537	1	0	0	0	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0078	6536	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0079	6535	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0080	6533	1	0	0	0	1	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0081	6532	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0082	6530	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0083	6530	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0084	6529	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0085	6529	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0086	6525	1	0	0	0	1	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0087	6513	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0088	6514	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0089	6512	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0090	6513	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0091	6521	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0092	6520	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0093	6531	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0094	6531	1	0	0	0	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0095	6533	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0096	6531	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0097	6533	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0098	6533	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0099	6531	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0100	6532	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0101	6531	1	0	0	0	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0102	6531	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0103	6530	1	0	0	0	1	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0104	6530	1	0	0	0	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0105	6529	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0106	6528	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0107	6532	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0108	6529	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0109	6531	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0110	6530	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0111	6531	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0112	6529	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0113	6530	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0114	6531	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0115	6530	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0116	6531	1	1	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797