Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
AVL9_chr7_32490489_32593726	0/0	t0052	5038	2	0	0	2	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0053	5039	2	0	0	2	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0054	5040	2	0	0	0	2	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0055	5036	2	0	0	2	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0056	5042	2	0	0	2	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0057	5039	2	1	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0058	5040	2	2	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0059	5041	2	0	1	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0060	5041	2	1	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/1	t0061	5042	2	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0062	5038	1	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0063	5040	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0064	5039	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0065	5040	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0066	5041	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0067	5043	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0068	5042	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0069	5042	1	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0070	5040	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0071	5042	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0072	5044	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0073	5045	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0074	5042	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0075	5043	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0076	5044	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0077	5045	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0078	5042	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	1/0	t0079	5041	1	0	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0080	5043	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0081	5037	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0082	5040	1	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0083	5040	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0084	5038	1	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0085	5041	1	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0086	5041	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0087	5039	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0088	5039	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0089	5043	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0090	5040	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0091	5044	1	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0092	5045	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0093	5038	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0094	5037	1	1	0	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0095	5038	1	0	1	0	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0096	5038	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0097	5889	1	0	0	0	1	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0098	5042	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0099	5041	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0100	5040	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726
AVL9_chr7_32490489_32593726	0/0	t0101	5039	1	0	0	1	0	copy fasta	AVL9	chr7	32490489	32593726