JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASSF2_chr20_4775023_4828608	0/0	t0068	4411	1	0	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0069	4412	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0070	4410	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0071	4411	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0072	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0073	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0074	4411	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0075	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0076	4411	1	0	0	0	0	1	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0077	4411	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0078	4411	1	0	0	1	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	t0079	4411	1	0	0	0	0	1	copy fasta	RASSF2	chr20	4775023	4828608
RASSF3_chr12_64605495_64702564	0/0	t0001	2795	60	3	8	46	0	3	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0002	2815	34	0	16	12	1	5	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0003	2811	31	7	2	19	2	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0004	2791	28	1	7	12	2	6	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0005	2783	15	0	10	0	1	4	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0006	2815	14	2	0	12	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0007	2823	14	2	7	1	1	3	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0008	2831	13	3	0	8	0	2	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0009	2783	10	2	1	6	0	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0010	2823	6	6	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0011	2827	6	6	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0012	2811	6	4	0	2	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0013	2815	6	0	1	0	3	2	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0014	2814	5	0	2	1	0	2	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0015	2803	5	0	5	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0016	2791	4	4	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0017	2791	4	4	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0018	2835	4	0	0	4	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0019	2795	4	1	0	0	2	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0020	2809	3	3	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0021	2783	3	3	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0022	2791	3	0	1	2	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0023	2835	3	0	0	3	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0024	2810	3	0	2	0	1	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	1/0	t0025	2791	3	1	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0026	2831	3	0	0	3	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0027	2838	3	3	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0028	2819	2	1	1	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0029	2827	2	2	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0030	2827	2	2	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0031	2791	2	2	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0032	2831	2	1	0	0	0	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0033	2795	2	0	0	2	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0034	2782	2	0	2	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0035	2814	2	0	1	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0036	2804	2	2	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0037	2795	2	0	0	2	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0038	2792	2	2	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564