JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASSF3_chr12_64605495_64702564	0/0	t0039	2799	2	0	0	2	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0040	2796	2	0	0	1	0	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0041	2790	2	1	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0042	2799	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0043	2823	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0044	2815	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0045	2826	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0046	2803	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0047	2799	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0048	2795	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0049	2779	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0050	2783	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0051	2811	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0052	2819	1	0	1	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0053	2816	1	0	0	0	0	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0054	2819	1	0	0	0	0	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0055	2824	1	0	1	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0056	2815	1	0	0	0	0	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0057	2820	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/1	t0058	2823	1	0	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0059	2795	1	0	0	0	1	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0060	2802	1	0	0	0	1	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0061	2811	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0062	2795	1	0	0	0	0	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0063	2790	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0064	2839	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0065	2811	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0066	2791	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0067	2812	1	0	1	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0068	2815	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0069	2816	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0070	2811	1	0	1	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0071	2815	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0072	2830	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0073	2836	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0074	2839	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0075	2808	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0076	2795	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0077	2790	1	0	0	0	1	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0078	2791	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0079	2791	1	0	0	0	0	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0080	2791	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0081	2802	1	0	0	0	0	1	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0082	2804	1	0	1	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0083	2794	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0084	2779	1	0	0	1	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0085	2815	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0086	2791	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0087	2830	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0088	2834	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564