JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASSF3_chr12_64605495_64702564	0/0	t0089	2834	1	0	1	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	t0090	2810	1	1	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF4_chr10_44954802_45000891	0/1	t0001	2666	242	51	43	100	9	38	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0002	2667	46	1	10	35	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0003	2666	26	3	0	23	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0004	2667	15	2	2	11	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0005	2668	9	4	0	2	1	2	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0006	2666	5	5	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0007	2666	5	0	0	5	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0008	2666	4	4	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0009	2666	4	4	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0010	2668	4	0	3	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0011	2666	3	3	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0012	2666	2	0	0	2	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	1/0	t0013	2666	2	0	1	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0014	2666	2	2	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0015	2667	2	2	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0016	2668	2	2	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0017	2666	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0018	2667	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0019	2666	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0020	2666	1	0	1	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0021	2667	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0022	2681	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0023	2666	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0024	2666	1	0	1	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0025	2666	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0026	2666	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0027	2666	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0028	2666	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0029	2666	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0030	2667	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0031	2668	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0032	2667	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0033	2666	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0034	2666	1	0	1	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0035	2666	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0036	2667	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0037	2666	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0038	2667	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	t0039	2666	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF5_chr1_206502531_206594448	1/1	t0001	2543	92	13	27	37	1	12	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0002	2543	64	9	10	40	3	2	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0003	2543	64	15	11	26	2	10	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0004	2543	23	3	1	17	2	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0005	2543	20	4	9	2	2	3	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0006	2543	15	12	1	0	0	2	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0007	2543	10	10	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0008	2543	10	0	0	10	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0009	2543	9	9	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448