JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASSF5_chr1_206502531_206594448	0/0	t0010	2543	6	0	0	3	0	3	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0011	2543	4	4	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0012	2543	4	4	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0013	2543	4	3	1	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0014	2543	2	0	2	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0015	2543	2	2	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0016	2543	2	0	0	2	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0017	2553	1	0	0	1	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0018	2543	1	0	0	0	0	1	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0019	2543	1	0	0	1	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0020	2543	1	0	1	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0021	2543	1	0	1	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0022	2543	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0023	2543	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0024	2543	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0025	2543	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0026	2543	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0027	2543	1	0	0	1	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0028	2543	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0029	2543	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0030	2543	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	t0031	2543	1	0	0	0	0	1	copy fasta	RASSF5	chr1	206502531	206594448
RASSF6_chr4_73566550_73625436	0/0	t0001	4869	157	27	24	82	6	18	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0002	4869	66	6	30	22	5	3	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0003	4869	36	6	2	23	2	3	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0004	4869	20	17	3	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0005	4869	13	5	0	3	0	5	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0006	4869	5	5	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0007	4869	3	1	2	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0008	4869	3	0	0	3	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0009	4869	3	0	1	0	0	2	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0010	4869	2	2	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0011	4869	2	0	0	2	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0012	4869	2	0	0	2	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0013	4869	2	0	2	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0014	4869	2	2	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0015	4872	2	2	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0016	4869	2	0	0	2	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0017	4869	1	0	1	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0018	4869	1	1	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0019	4869	1	0	1	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0020	4869	1	0	0	1	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0021	4869	1	1	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/1	t0022	4869	1	0	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0023	4869	1	0	1	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0024	4869	1	1	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0025	4869	1	0	0	0	0	1	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0026	4869	1	0	0	1	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0027	4869	1	1	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0028	4869	1	0	0	0	1	0	copy fasta	RASSF6	chr4	73566550	73625436