JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASSF6_chr4_73566550_73625436	0/0	t0029	4869	1	1	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0030	4869	1	0	0	1	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0031	4872	1	1	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0032	4869	1	1	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	1/0	t0033	4869	1	0	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	t0034	4869	1	0	1	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF7_chr11_555970_569025	0/1	t0001	896	282	62	56	111	16	36	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0002	896	62	13	9	32	1	7	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0003	896	19	5	5	7	1	1	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0004	896	8	8	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0005	896	6	2	4	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0006	896	3	3	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0007	896	3	2	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0008	896	2	0	0	2	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0009	896	2	0	2	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0010	896	2	1	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0011	896	1	1	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0012	896	1	1	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0013	896	1	0	0	0	0	1	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0014	896	1	0	0	0	0	1	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0015	896	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0016	896	1	0	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0017	896	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	t0018	896	1	0	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF8_chr12_25953682_26077869	0/0	t0001	4721	63	0	3	58	0	2	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/1	t0002	4719	42	9	10	4	4	14	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0003	4721	41	0	10	25	2	4	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0004	4720	41	5	14	17	0	5	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0005	4709	38	0	0	38	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0006	4720	36	11	3	15	4	3	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0007	4721	13	7	3	3	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0008	4720	10	9	1	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0009	4720	10	4	1	4	0	1	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0010	4721	7	4	3	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0011	4720	6	3	0	1	0	2	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0012	4720	5	5	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	1/0	t0013	4721	5	4	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0014	4721	4	0	3	0	0	1	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0015	4721	4	2	1	0	0	1	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0016	4720	4	0	0	4	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0017	4721	3	0	0	3	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0018	4719	3	0	0	3	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0019	4720	3	2	1	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0020	4721	3	0	2	0	0	1	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0021	4710	3	0	0	3	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0022	4721	2	2	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0023	4719	2	2	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0024	4720	2	2	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0025	4720	2	2	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0026	4721	2	0	0	2	0	0	copy fasta	RASSF8	chr12	25953682	26077869