JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RASSF8_chr12_25953682_26077869	0/0	t0027	4719	2	0	1	0	1	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0028	4722	2	2	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0029	4720	2	2	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0030	4721	2	0	2	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0031	4710	2	0	0	2	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0032	4719	2	2	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0033	4720	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0034	4738	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0035	4721	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0036	4721	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0037	4721	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0038	4721	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0039	4720	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0040	4720	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0041	4719	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0042	4730	1	0	0	0	0	1	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0043	4721	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0044	4721	1	0	1	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0045	4720	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0046	4720	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0047	4722	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0048	4721	1	0	0	0	0	1	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0049	4721	1	0	0	0	1	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0050	4721	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0051	4720	1	0	1	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0052	4720	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0053	4720	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0054	4721	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0055	4711	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0056	4710	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0057	4719	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0058	4721	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0059	4719	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0060	4738	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0061	4806	1	0	0	1	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	t0062	4720	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF9_chr12_85795703_85841409	1/0	t0001	4208	193	36	40	86	6	24	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/1	t0002	4208	23	3	13	0	3	3	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0003	4206	22	1	14	5	2	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0004	4206	13	0	0	13	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0005	4209	9	8	1	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0006	4208	8	0	0	8	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0007	4210	6	3	0	0	0	3	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0008	4208	6	6	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0009	4206	4	0	2	0	2	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0010	4208	4	0	0	4	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0011	4208	3	3	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0012	4209	3	3	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0013	4208	3	3	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	t0014	4206	3	3	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409